Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-50/megassr/results/hub_GCF_022493075.1/fasta/hub_GCF_022493075.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           2703122
Total number of identified SSRs:                 14
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	3
5	4
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	4	4
ATC	-	-	1		1
ATG	-	-	1		1
CAA	-	-	1		1
ATTTA	1				1
ATTTT	1				1
CAAAT	1				1
TTGAT	1				1
AAAGAA	1				1
TAAAGA	1				1
TAAAGG	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	4	4
AAC/GTT	-	-	1		1
ATC/ATG	-	-	2		2
AAAAT/ATTTT	1				1
AAATC/ATTTG	2				2
AAATT/AATTT	1				1
AAAAAG/CTTTTT	1				1
AAAGAT/ATCTTT	1				1
AAAGGT/ACCTTT	1				1
