Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-93/megassr/results/hub_GCF_022341465.1/fasta/hub_GCF_022341465.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              6
Total size of examined sequences (bp):           5745895
Total number of identified SSRs:                 43
Number of SSR containing sequences:              4
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	18
5	11
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	total
CG	-	-	-	2	1																				3
GC	-	-	-	1																					1
CAG	-	-	1																						1
CCA	-	-	2																						2
CCG	-	-	3																						3
CGC	-	-	1																						1
CGG	-	-	2																						2
CTG	-	-	2																						2
GAC	-	-	1																						1
GCC	-	-	2	1																					3
GGC	-	-	2																						2
GTC	-	-	1																						1
AATAA	1																								1
AATCA	1																								1
ACCAG	1																								1
CCACG	1																								1
CCCGG	1																								1
CCGCG	1																								1
CTGAC	1																								1
GCTGG			1																						1
GGCGC	1																								1
TCTCT	1																								1
TTTAT	1																								1
AGAGGA	1																								1
CGGCCA	1																								1
CTGGTG	1																								1
CTGGTT		1																							1
GAAGTC	1																								1
GCTCCG		1																							1
GTGGAA	1																								1
TCTTCG	1																								1
TGCGGC	1																								1
TGCTCC																								1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	total
CG/CG	-	-	-	3	1																				4
ACC/GGT	-	-	2																						2
ACG/CGT	-	-	2																						2
AGC/CTG	-	-	3																						3
CCG/CGG	-	-	10	1																					11
AAAAT/ATTTT	2																								2
AAATC/ATTTG	1																								1
AAGAG/CTCTT	1																								1
ACCAG/CTGGT	1																								1
ACCTG/AGGTC	1																								1
ACGCC/CGTGG	1																								1
AGCCC/CTGGG			1																						1
CCCGG/CCGGG	1																								1
CCGCG/CGCGG	2																								2
AACCAG/CTGGTT		1																							1
AAGACG/CGTCTT	1																								1
AAGAGG/CCTCTT	1																								1
AAGTCG/ACTTCG	1																								1
AAGTGG/ACTTCC	1																								1
ACCAGC/CTGGTG	1																								1
ACGGCC/CCGTGG	1																								1
AGCAGG/CCTGCT																								1	1
AGCCGC/CGGCTG	1																								1
AGCCGG/CCGGCT		1																							1
