Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-65/megassr/results/hub_GCF_021533725.1/fasta/hub_GCF_021533725.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              99
Total size of examined sequences (bp):           5374522
Total number of identified SSRs:                 32
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	11
5	6
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	4	1	5
GC	-	-	-	2		2
CAG	-	-	1			1
CCG	-	-	2			2
CGC	-	-		2		2
CGG	-	-	1			1
CTG	-	-	1			1
GAC	-	-	1			1
GCA	-	-	1			1
GCC	-	-	1			1
GCG	-	-	1			1
CCACG	1					1
CGCCG	2					2
GCCGG	1					1
GGCGC	1					1
TCACA	1					1
CACCAG	1					1
CAGGCG	1					1
CGACTT	1					1
GCTCCG		1				1
GCTGCC	1					1
GGTATC	1					1
TCAGCG	1					1
TTCCAC	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	6	1	7
ACG/CGT	-	-	1			1
AGC/CTG	-	-	3			3
CCG/CGG	-	-	5	2		7
ACATC/ATGTG	1					1
ACGCC/CGTGG	1					1
CCCGG/CCGGG	1					1
CCGCG/CGCGG	3					3
AAGTCG/ACTTCG	1					1
AAGTGG/ACTTCC	1					1
ACCAGC/CTGGTG	1					1
ACCGAT/ATCGGT	1					1
ACGCTG/AGCGTC	1					1
AGCCGG/CCGGCT		1				1
AGCGGC/CCGCTG	1					1
AGGCGC/CCTGCG	1					1
