Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-64/megassr/results/hub_GCF_021533705.1/fasta/hub_GCF_021533705.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              231
Total size of examined sequences (bp):           5580585
Total number of identified SSRs:                 43
Number of SSR containing sequences:              35
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	10
3	17
5	3
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	3	2	5
GC	-	-	-	5		5
CCG	-	-	1			1
CGA	-	-	1			1
CGG	-	-	3	1		4
CTG	-	-	2			2
GCA	-	-	1			1
GCG	-	-	1			1
GCT	-	-	1			1
GGC	-	-	3	1		4
GTG	-	-	1			1
TCG	-	-	1			1
CCGCG	1					1
CGGGC	1					1
GGCGC	1					1
CACCAG	1					1
CGACTT	1					1
GACGAA	1					1
GCGACC	1					1
GCGCTG	2					2
GCGTGA	1					1
GCTCCG		1				1
GGCGCC	1					1
GGCGCT	1					1
GTTGCT	1					1
TCATCG		1				1
TTCCAC	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	8	2	10
ACC/GGT	-	-	1			1
ACG/CGT	-	-	2			2
AGC/CTG	-	-	4			4
CCG/CGG	-	-	8	2		10
CCCGG/CCGGG	1					1
CCGCG/CGCGG	2					2
AACAGC/CTGTTG	1					1
AAGACG/CGTCTT	1					1
AAGTCG/ACTTCG	1					1
AAGTGG/ACTTCC	1					1
ACCAGC/CTGGTG	1					1
ACCGCG/CGCGGT	1					1
ACGATG/ATCGTC		1				1
ACGCTC/AGCGTG	1					1
AGCCGG/CCGGCT		1				1
AGCGCC/CGCTGG	3					3
CCGGCG/CCGGCG	1					1
