Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-62/megassr/results/hub_GCF_021533675.1/fasta/hub_GCF_021533675.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              75
Total size of examined sequences (bp):           5031066
Total number of identified SSRs:                 43
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  10
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	8
3	18
5	4
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG	-	-	-	5	2							7
GC	-	-	-	1								1
CAG	-	-	1									1
CCG	-	-	3									3
CGC	-	-	1	3								4
CGT	-	-	1									1
CTG	-	-	2									2
GAT	-	-	1									1
GCC	-	-	2									2
GCT	-	-	1									1
GGC	-	-	2									2
TCG	-	-	1									1
CCGCG	1											1
CGCCG	1											1
GCCCG	1											1
GGCGC	1											1
AAAGGC	1											1
CAGCGC	2											2
CCAGGC			1									1
GAAGTC	1											1
GCAGGA											2	2
GCCTGG	1											1
GCTCCG		1										1
GCTGCC	1											1
GTGGAA	1											1
GTTGCT	1											1
TCTTCG	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG/CG	-	-	-	6	2							8
ACG/CGT	-	-	2									2
AGC/CTG	-	-	4									4
ATC/ATG	-	-	1									1
CCG/CGG	-	-	8	3								11
CCCGG/CCGGG	1											1
CCGCG/CGCGG	3											3
AAAGGC/CCTTTG	1											1
AACAGC/CTGTTG	1											1
AAGACG/CGTCTT	1											1
AAGTCG/ACTTCG	1											1
AAGTGG/ACTTCC	1											1
AGCAGG/CCTGCT											2	2
AGCCGG/CCGGCT		1										1
AGCGCC/CGCTGG	2											2
AGCGGC/CCGCTG	1											1
AGGCCC/CCTGGG	1		1									2
