Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-78/megassr/results/hub_GCF_021533385.1/fasta/hub_GCF_021533385.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              344
Total size of examined sequences (bp):           5054465
Total number of identified SSRs:                 52
Number of SSR containing sequences:              44
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	8
3	22
5	9
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	3			3
GC	-	-	-	5			5
CCG	-	-	2				2
CGC	-	-	2	1			3
CGG	-	-	3				3
CTG	-	-	2				2
GCA	-	-	1				1
GCC	-	-	2				2
GCG	-	-	3				3
GCT	-	-	2				2
GGC	-	-	1	1			2
GTG	-	-	1				1
TGC	-	-	1				1
AAACA	1						1
ATCGG	1						1
ATTAA						1	1
CGCCG	1						1
CGGCG	1						1
GCCGC	2						2
GCGCG	2						2
AAAACC	1						1
CAGGCG	1						1
CCACCG	1						1
CCTGCT	1						1
CGCCAG	1						1
CGGCGA	1						1
CTGGCG	1						1
GCCGGT	1						1
GCGTTG	1						1
GCTGGC	1						1
GGGCTG	1						1
GTGCCG	1						1
TGCCGG	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	8			8
ACC/GGT	-	-	1				1
AGC/CTG	-	-	6				6
CCG/CGG	-	-	13	2			15
AAAAC/GTTTT	1						1
AAATT/AATTT						1	1
ATCCG/ATCGG	1						1
CCGCG/CGCGG	6						6
AAAACC/GGTTTT	1						1
AACGCC/CGTTGG	1						1
ACCGCC/CGGTGG	1						1
ACCGGC/CCGGTG	3						3
ACGGCG/CCGTCG	1						1
AGCAGG/CCTGCT	1						1
AGCCCC/CTGGGG	1						1
AGCGCC/CGCTGG	3						3
AGGCGC/CCTGCG	1						1
