Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-59/megassr/results/hub_GCF_021533285.1/fasta/hub_GCF_021533285.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              487
Total size of examined sequences (bp):           3809570
Total number of identified SSRs:                 14
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  0
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	1
5	3
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
AG	-	-	-		1	1
GA	-	-	-	1		1
AAC	-	-	1			1
AAAAG	1					1
AGCGC	1					1
TTTTG	1					1
AATTCT	1					1
ACAGCA			1			1
ATGGGA	1					1
CTACTT			1			1
GCAACA			1			1
GCGATG	1					1
GTAGAA			1			1
TTTAAA	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AG/CT	-	-	-	1	1	2
AAC/GTT	-	-	1			1
AAAAC/GTTTT	1					1
AAAAG/CTTTT	1					1
AGCGC/CGCTG	1					1
AAATTT/AAATTT	1					1
AACAGC/CTGTTG			2			2
AAGTAG/ACTTCT			2			2
AATGGG/ATTCCC	1					1
AATTAG/AATTCT	1					1
ATCGCC/ATGGCG	1					1
