Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-54/megassr/results/hub_GCF_021288745.1/fasta/hub_GCF_021288745.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              654
Total size of examined sequences (bp):           4882600
Total number of identified SSRs:                 25
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	11
4	1
5	5
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	2		2
ACG	-	-		1		1
CAC	-	-	1			1
CAG	-	-	1			1
CCG	-	-	1		1	2
CGC	-	-	2			2
CTG	-	-	1			1
GCC	-	-	1			1
GCG	-	-		1		1
TTC	-	-	1			1
GGAC	-		1			1
AACAC			1			1
CACGC	1					1
GCGCG	2					2
GGGCG	1					1
CTGGTT	1					1
GAAGTC	1					1
GCGCCA	1					1
TCAGGT	1					1
TCGCTT	1					1
TTTTTA	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	2		2
AAG/CTT	-	-	1			1
ACC/GGT	-	-	1			1
ACG/CGT	-	-		1		1
AGC/CTG	-	-	2			2
CCG/CGG	-	-	4	1	1	6
ACGG/CCGT	-		1			1
AACAC/GTGTT			1			1
ACGCC/CGTGG	1					1
CCCCG/CGGGG	1					1
CCGCG/CGCGG	2					2
AAAAAT/ATTTTT	1					1
AAAGCG/CGCTTT	1					1
AACCAG/CTGGTT	1					1
AACCTG/AGGTTC	1					1
AAGTCG/ACTTCG	1					1
AGCGCC/CGCTGG	1					1
