Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-50/megassr/results/hub_GCF_021288665.1/fasta/hub_GCF_021288665.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              86
Total size of examined sequences (bp):           4647708
Total number of identified SSRs:                 32
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	12
4	3
5	6
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
CG	-	-	-	2			1						3
GA	-	-	-									1	1
GC	-	-	-			1							1
CAG	-	-	1										1
CGC	-	-	1										1
CGT	-	-		1									1
CTG	-	-	1										1
GCG	-	-	2	1									3
GGC	-	-	1	2	1								4
TTC	-	-	1										1
ATAC	-								1				1
CCGT	-		1										1
GGCC	-	1											1
AACAC			1										1
CACGC	1												1
CGCGC	1												1
CGTCT	1												1
GCGCG	1												1
GGGCG	1												1
CTGGTT	1												1
GAAGTC	1												1
GCTGGC	1												1
TCAGGT	1												1
TCGCTT	1												1
TTTTTA	1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AG/CT	-	-	-									1	1
CG/CG	-	-	-	2		1	1						4
AAG/CTT	-	-	1										1
ACG/CGT	-	-		1									1
AGC/CTG	-	-	2										2
CCG/CGG	-	-	4	3	1								8
ACAT/ATGT	-								1				1
ACGG/CCGT	-		1										1
CCGG/CCGG	-	1											1
AACAC/GTGTT			1										1
ACGAG/CGTCT	1												1
ACGCC/CGTGG	1												1
CCCCG/CGGGG	1												1
CCGCG/CGCGG	2												2
AAAAAT/ATTTTT	1												1
AAAGCG/CGCTTT	1												1
AACCAG/CTGGTT	1												1
AACCTG/AGGTTC	1												1
AAGTCG/ACTTCG	1												1
AGCGCC/CGCTGG	1												1
