Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-48/megassr/results/hub_GCF_021288625.1/fasta/hub_GCF_021288625.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              464
Total size of examined sequences (bp):           4797237
Total number of identified SSRs:                 24
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	9
5	5
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG	-	-	-	2							2
TC	-	-	-							1	1
ACG	-	-		1							1
AGC	-	-	1								1
CAG	-	-	1								1
CGA	-	-	1								1
CGC	-	-	2								2
CTG	-	-	1								1
GCC	-	-	1								1
TTC	-	-	1								1
AACAC			1								1
CACGC	1										1
CGCGC	1										1
GCGCG	1										1
GGGCG	1										1
AGCGCC	1										1
CTGGTT	1										1
GAAGTC	1										1
GCGCCA	1										1
TCAGGT	1										1
TCGCTT	1										1
TTTTTA	1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
AG/CT	-	-	-							1	1
CG/CG	-	-	-	2							2
AAG/CTT	-	-	1								1
ACG/CGT	-	-	1	1							2
AGC/CTG	-	-	3								3
CCG/CGG	-	-	3								3
AACAC/GTGTT			1								1
ACGCC/CGTGG	1										1
CCCCG/CGGGG	1										1
CCGCG/CGCGG	2										2
AAAAAT/ATTTTT	1										1
AAAGCG/CGCTTT	1										1
AACCAG/CTGGTT	1										1
AACCTG/AGGTTC	1										1
AAGTCG/ACTTCG	1										1
AGCGCC/CGCTGG	2										2
