Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-45/megassr/results/hub_GCF_021288525.1/fasta/hub_GCF_021288525.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              321
Total size of examined sequences (bp):           4738090
Total number of identified SSRs:                 25
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	2
3	10
4	1
5	5
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1
CG	-	-	-	2															2
ACG	-	-		1															1
CAG	-	-	1																1
CCG	-	-		1	1														2
CGC	-	-	2																2
CTG	-	-	2																2
GCC	-	-	1																1
TTC	-	-	1																1
GGAC	-		1																1
AACAC			1																1
CACGC	1																		1
CGCGC	1																		1
GCGCG	1																		1
GGGCG	1																		1
CTGGTT	1																		1
GAAGTC	1																		1
GCGCCA	1																		1
TCAGGT	1																		1
TCGCTT	1																		1
TTTTTA	1																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1
CG/CG	-	-	-	2															2
AAG/CTT	-	-	1																1
ACG/CGT	-	-		1															1
AGC/CTG	-	-	3																3
CCG/CGG	-	-	3	1	1														5
ACGG/CCGT	-		1																1
AACAC/GTGTT			1																1
ACGCC/CGTGG	1																		1
CCCCG/CGGGG	1																		1
CCGCG/CGCGG	2																		2
AAAAAT/ATTTTT	1																		1
AAAGCG/CGCTTT	1																		1
AACCAG/CTGGTT	1																		1
AACCTG/AGGTTC	1																		1
AAGTCG/ACTTCG	1																		1
AGCGCC/CGCTGG	1																		1
