Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-43/megassr/results/hub_GCF_021288505.1/fasta/hub_GCF_021288505.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              407
Total size of examined sequences (bp):           4776218
Total number of identified SSRs:                 26
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	9
4	1
5	7
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
CG	-	-	-	2			1	3
CAG	-	-	1					1
CCG	-	-		1	1			2
CGC	-	-	2					2
CGT	-	-		1				1
CTG	-	-	1					1
GAA	-	-	1					1
GGC	-	-	1					1
GGAC	-		1					1
AACAC			1					1
CAAAA	1							1
CACGC	1							1
CGCCC	1							1
CGCGC	1							1
GAGAC	1							1
GCGCG	1							1
ATAAAA	1							1
CTGGTT	1							1
GAAGTC	1							1
GCGCCA	1							1
TCAGGT	1							1
TCGCTT	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
CG/CG	-	-	-	2			1	3
AAG/CTT	-	-	1					1
ACG/CGT	-	-		1				1
AGC/CTG	-	-	2					2
CCG/CGG	-	-	3	1	1			5
ACGG/CCGT	-		1					1
AAAAC/GTTTT	1							1
AACAC/GTGTT			1					1
ACGAG/CGTCT	1							1
ACGCC/CGTGG	1							1
CCCCG/CGGGG	1							1
CCGCG/CGCGG	2							2
AAAAAT/ATTTTT	1							1
AAAGCG/CGCTTT	1							1
AACCAG/CTGGTT	1							1
AACCTG/AGGTTC	1							1
AAGTCG/ACTTCG	1							1
AGCGCC/CGCTGG	1							1
