Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-48/megassr/results/hub_GCF_021288125.1/fasta/hub_GCF_021288125.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              311
Total size of examined sequences (bp):           4842332
Total number of identified SSRs:                 10
Number of SSR containing sequences:              5
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	1
5	1
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
GC	-	-	-	2		2
TA	-	-	-		1	1
CGG	-	-	1			1
CGCTG	1					1
CAGACG	1					1
CAGGTG				1		1
GAAGTC	1					1
GCGCCA		1				1
TGGCGA	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AT/AT	-	-	-		1	1
CG/CG	-	-	-	2		2
CCG/CGG	-	-	1			1
AGCGC/CGCTG	1					1
AAGTCG/ACTTCG	1					1
ACCTGC/AGGTGC				1		1
ACGCAG/CGTCTG	1					1
AGCGCC/CGCTGG		1				1
ATCGCC/ATGGCG	1					1
