Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-128/megassr/results/hub_GCF_021287925.1/fasta/hub_GCF_021287925.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              871
Total size of examined sequences (bp):           4989901
Total number of identified SSRs:                 28
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	9
4	2
5	7
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
CG	-	-	-	2	1					3
TC	-	-	-						1	1
CAG	-	-	1							1
CGA	-	-	1							1
CGC	-	-	2	1						3
CGT	-	-		1						1
CTG	-	-	1							1
GGC	-	-	1							1
TTC	-	-	1							1
CCGT	-		1							1
TCCG	-	1								1
AACAC			1							1
CACGC	1									1
CGCGC	1									1
GAGAC	1									1
GCCGC	1									1
GCGCG	1									1
GGGCG	1									1
CTGGTT	1									1
GAAGTC	1									1
GCGCCA	1									1
TCAGGT	1									1
TCGCTT	1									1
TTTTTA	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AG/CT	-	-	-						1	1
CG/CG	-	-	-	2	1					3
AAG/CTT	-	-	1							1
ACG/CGT	-	-	1	1						2
AGC/CTG	-	-	2							2
CCG/CGG	-	-	3	1						4
ACGG/CCGT	-	1	1							2
AACAC/GTGTT			1							1
ACGAG/CGTCT	1									1
ACGCC/CGTGG	1									1
CCCCG/CGGGG	1									1
CCGCG/CGCGG	3									3
AAAAAT/ATTTTT	1									1
AAAGCG/CGCTTT	1									1
AACCAG/CTGGTT	1									1
AACCTG/AGGTTC	1									1
AAGTCG/ACTTCG	1									1
AGCGCC/CGCTGG	1									1
