Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-127/megassr/results/hub_GCF_021287905.1/fasta/hub_GCF_021287905.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              215
Total size of examined sequences (bp):           4688292
Total number of identified SSRs:                 24
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	3
2	2
3	8
5	5
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																		1																																																				2	3
CG	-	-	-	2																																																																																				2
CAG	-	-	1																																																																																					1
CCG	-	-	1																																																																																					1
CGC	-	-	1																																																																																					1
CGT	-	-		1																																																																																				1
CTG	-	-	1																																																																																					1
GCC	-	-	1																																																																																					1
GCG	-	-	1																																																																																					1
TTC	-	-	1																																																																																					1
AACAC			1																																																																																					1
CACGC	1																																																																																							1
GCGCG	2																																																																																							2
GGGCG	1																																																																																							1
CTGGTT	1																																																																																							1
GAAGTC	1																																																																																							1
GCTGGC	1																																																																																							1
TCAGGT	1																																																																																							1
TCGCTT	1																																																																																							1
TTTTTA	1																																																																																							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																		1																																																				2	3
CG/CG	-	-	-	2																																																																																				2
AAG/CTT	-	-	1																																																																																					1
ACG/CGT	-	-		1																																																																																				1
AGC/CTG	-	-	2																																																																																					2
CCG/CGG	-	-	4																																																																																					4
AACAC/GTGTT			1																																																																																					1
ACGCC/CGTGG	1																																																																																							1
CCCCG/CGGGG	1																																																																																							1
CCGCG/CGCGG	2																																																																																							2
AAAAAT/ATTTTT	1																																																																																							1
AAAGCG/CGCTTT	1																																																																																							1
AACCAG/CTGGTT	1																																																																																							1
AACCTG/AGGTTC	1																																																																																							1
AAGTCG/ACTTCG	1																																																																																							1
AGCGCC/CGCTGG	1																																																																																							1
