Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-117/megassr/results/hub_GCF_021287685.1/fasta/hub_GCF_021287685.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              139
Total size of examined sequences (bp):           4665654
Total number of identified SSRs:                 27
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	11
4	1
5	6
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	2		2
GA	-	-	-	1		1
ACG	-	-		1		1
CAG	-	-	1			1
CGC	-	-	2			2
CGT	-	-	1			1
CTG	-	-	1			1
GCC	-	-	1			1
GCG	-	-			1	1
GGC	-	-		1	1	2
TTC	-	-	1			1
CCGT	-		1			1
AACAC			1			1
CACGC	1					1
CGCGC	1					1
CGTCT	1					1
GCGCG	1					1
GGGCG	1					1
CTGGTT	1					1
GAAGTC	1					1
GCGCCA	1					1
TCAGGT	1					1
TCGCTT	1					1
TTTTTA	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AG/CT	-	-	-	1		1
CG/CG	-	-	-	2		2
AAG/CTT	-	-	1			1
ACG/CGT	-	-	1	1		2
AGC/CTG	-	-	2			2
CCG/CGG	-	-	3	1	2	6
ACGG/CCGT	-		1			1
AACAC/GTGTT			1			1
ACGAG/CGTCT	1					1
ACGCC/CGTGG	1					1
CCCCG/CGGGG	1					1
CCGCG/CGCGG	2					2
AAAAAT/ATTTTT	1					1
AAAGCG/CGCTTT	1					1
AACCAG/CTGGTT	1					1
AACCTG/AGGTTC	1					1
AAGTCG/ACTTCG	1					1
AGCGCC/CGCTGG	1					1
