Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-115/megassr/results/hub_GCF_021287625.1/fasta/hub_GCF_021287625.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              377
Total size of examined sequences (bp):           4763076
Total number of identified SSRs:                 21
Number of SSR containing sequences:              11
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	7
5	6
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
CG	-	-	-	2	2
ACG	-	-		1	1
CAG	-	-	1		1
CGC	-	-	2		2
CTG	-	-	1		1
GCC	-	-	1		1
TTC	-	-	1		1
AACAC			1		1
CACGC	1				1
GAGAC	1				1
GCGCG	2				2
GGGCG	1				1
CTGGTT	1				1
GAAGTC	1				1
GCGCCA	1				1
TCAGGT	1				1
TCGCTT	1				1
TTTTTA	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
CG/CG	-	-	-	2	2
AAG/CTT	-	-	1		1
ACG/CGT	-	-		1	1
AGC/CTG	-	-	2		2
CCG/CGG	-	-	3		3
AACAC/GTGTT			1		1
ACGAG/CGTCT	1				1
ACGCC/CGTGG	1				1
CCCCG/CGGGG	1				1
CCGCG/CGCGG	2				2
AAAAAT/ATTTTT	1				1
AAAGCG/CGCTTT	1				1
AACCAG/CTGGTT	1				1
AACCTG/AGGTTC	1				1
AAGTCG/ACTTCG	1				1
AGCGCC/CGCTGG	1				1
