Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-95/megassr/results/hub_GCF_021285565.1/fasta/hub_GCF_021285565.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              588
Total size of examined sequences (bp):           4848556
Total number of identified SSRs:                 28
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	11
4	1
5	7
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG	-	-	-	2								2
TC	-	-	-								1	1
CAG	-	-	1									1
CGC	-	-	2									2
CGT	-	-	1	1								2
CTG	-	-	1									1
GCC	-	-	1									1
GCG	-	-	1									1
GGC	-	-		1	1							2
TTC	-	-	1									1
CCGT	-		1									1
AACAC			1									1
CAAAA	1											1
CACGC	1											1
CGCGC	1											1
GAGAC	1											1
GCGCG	1											1
GGGCG	1											1
CTGGTT	1											1
GAAGTC	1											1
GCGCCA	1											1
TCAGGT	1											1
TCGCTT	1											1
TTTTTA	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AG/CT	-	-	-								1	1
CG/CG	-	-	-	2								2
AAG/CTT	-	-	1									1
ACG/CGT	-	-	1	1								2
AGC/CTG	-	-	2									2
CCG/CGG	-	-	4	1	1							6
ACGG/CCGT	-		1									1
AAAAC/GTTTT	1											1
AACAC/GTGTT			1									1
ACGAG/CGTCT	1											1
ACGCC/CGTGG	1											1
CCCCG/CGGGG	1											1
CCGCG/CGCGG	2											2
AAAAAT/ATTTTT	1											1
AAAGCG/CGCTTT	1											1
AACCAG/CTGGTT	1											1
AACCTG/AGGTTC	1											1
AAGTCG/ACTTCG	1											1
AGCGCC/CGCTGG	1											1
