Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-47/megassr/results/hub_GCF_021045105.1/fasta/hub_GCF_021045105.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              52
Total size of examined sequences (bp):           4339652
Total number of identified SSRs:                 31
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	8
3	10
4	1
5	3
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	3		1	4
GC	-	-	-	4			4
ACC	-	-	1				1
CCA	-	-	1				1
CCG	-	-	1	2			3
CTG	-	-	1				1
GCC	-	-	3				3
GGC	-	-	1				1
GGCG	-	1					1
AGGCC	1						1
CGCGC	2						2
CAGCTC	1						1
CGCTGA	1						1
CTGTTC				1			1
GAAGTC	1						1
GCGGGT			1				1
GCTCCG		1					1
GCTGGC	1						1
GGAGCA	1						1
TGCTGG	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	7		1	8
ACC/GGT	-	-	2				2
AGC/CTG	-	-	1				1
CCG/CGG	-	-	5	2			7
CCCG/CGGG	-	1					1
AGGCC/CCTGG	1						1
CCGCG/CGCGG	2						2
AACAGG/CCTGTT				1			1
AAGTCG/ACTTCG	1						1
ACCAGC/CTGGTG	1						1
ACCCGC/CGGGTG			1				1
ACGCTG/AGCGTC	1						1
AGCAGG/CCTGCT	1						1
AGCCGG/CCGGCT		1					1
AGCGCC/CGCTGG	1						1
AGCTCC/AGCTGG	1						1
