Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-58/megassr/results/hub_GCF_020809085.1/fasta/hub_GCF_020809085.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           6758829
Total number of identified SSRs:                 35
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	4
5	11
6	16

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	1			1
GC	-	-	-	3			3
CAC	-	-	1				1
CGG	-	-	1				1
GCA	-	-		1			1
GGC	-	-	1				1
ATTTT	1						1
CAAGC	1						1
CCGCG	1						1
CGCGA	1						1
CGGCG	1						1
CTGCC	1						1
GCCGA	1						1
GCGGC	1						1
GGCGC	1						1
TGATC		1					1
TTGCG		1					1
ATGGCC	1						1
CACAGC					1		1
CACGAC		1					1
CAGAGC	1						1
CCTTGA	1						1
CGACCG	1						1
CGCAGG	2						2
CGGGGC	1						1
CGGTGG	1						1
CTTGGC	1						1
GCTCTG	1						1
GGCGCA	1						1
GGTGCT						1	1
TCGGGC	1						1
TTGGCC	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	4			4
ACC/GGT	-	-	1				1
AGC/CTG	-	-		1			1
CCG/CGG	-	-	2				2
AAAAT/ATTTT	1						1
AACGC/CGTTG		1					1
AAGCC/CTTGG	1						1
ACGCG/CGCGT	1						1
AGATC/ATCTG		1					1
AGCCG/CGGCT	1						1
AGGGC/CCCTG	1						1
CCGCG/CGCGG	4						4
AAGGCC/CCTTGG	2						2
AAGGTC/ACCTTG	1						1
ACAGCC/CTGTGG					1		1
ACCACG/CGTGGT		1					1
ACCAGC/CTGGTG						1	1
ACCGCC/CGGTGG	1						1
ACCGCG/CGCGGT	1						1
AGAGCC/CTCTGG	2						2
AGCCCG/CGGGCT	1						1
AGGCGC/CCTGCG	3						3
ATGGCC/ATGGCC	1						1
CCCCGG/CCGGGG	1						1
