Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-46/megassr/results/hub_GCF_020809025.3/fasta/hub_GCF_020809025.3_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              35
Total size of examined sequences (bp):           4440516
Total number of identified SSRs:                 22
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	9
5	5
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
CG	-	-	-	1				1
GC	-	-	-	2				2
TG	-	-	-			1		1
AGC	-	-	1					1
CAG	-	-	1					1
CCG	-	-	1					1
CGC	-	-	1					1
CGG	-	-	1					1
CGT	-	-		1				1
GCC	-	-	1					1
GCG	-	-	1					1
GGC	-	-	1					1
ACGTC	1							1
CACGC	1							1
CGCGC	2							2
GCGCC	1							1
CACCAG							1	1
CCGGCA	1							1
CGCCAG	1							1
GCGCCA	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AC/GT	-	-	-			1		1
CG/CG	-	-	-	3				3
ACG/CGT	-	-		1				1
AGC/CTG	-	-	2					2
CCG/CGG	-	-	6					6
ACGCC/CGTGG	1							1
ACGTC/ACGTG	1							1
CCGCG/CGCGG	3							3
ACCAGC/CTGGTG							1	1
ACCGGC/CCGGTG	1							1
AGCGCC/CGCTGG	2							2
