Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-61/megassr/results/hub_GCF_020783075.1/fasta/hub_GCF_020783075.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              144
Total size of examined sequences (bp):           3267333
Total number of identified SSRs:                 10
Number of SSR containing sequences:              10
Number of sequences containing more than 1 SSR:  0
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	2
5	3
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	total
AT	-	-	-	2													2
ACC	-	-	1														1
ATG	-	-	1														1
CCAAA	1																1
CTTTC	1																1
TTTAT	1																1
GGTTTT																1	1
TTTCAG	1																1
TTTTTC	1																1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	total
AT/AT	-	-	-	2													2
ACC/GGT	-	-	1														1
ATC/ATG	-	-	1														1
AAAAT/ATTTT	1																1
AAACC/GGTTT	1																1
AAAGG/CCTTT	1																1
AAAAAG/CTTTTT	1																1
AAAACC/GGTTTT																1	1
AAACTG/AGTTTC	1																1
