Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-57/megassr/results/hub_GCF_020783005.1/fasta/hub_GCF_020783005.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              22
Total size of examined sequences (bp):           2982530
Total number of identified SSRs:                 19
Number of SSR containing sequences:              7
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	4
4	1
5	5
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	1	1
TA	-	-	-	1	1
ATT	-	-	1		1
GTT	-	-	1		1
TAA	-	-	1		1
TCA	-	-	1		1
AAAT	-	1			1
AAGAA	1				1
GAAAA	1				1
TTATT	2				2
TTTGA	1				1
GCATCA	1				1
GCATCT	1				1
GCCGAC	1				1
GCGTCG	1				1
TCGGCA		1			1
TTAATA	1				1
TTTTTC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	2	2
AAC/GTT	-	-	1		1
AAT/ATT	-	-	2		2
ATC/ATG	-	-	1		1
AAAT/ATTT	-	1			1
AAAAG/CTTTT	2				2
AAAAT/ATTTT	2				2
AAATC/ATTTG	1				1
AAAAAG/CTTTTT	1				1
AATATT/AATATT	1				1
ACGCCG/CGGCGT	2				2
AGATGC/ATCTGC	1				1
AGCATC/ATGCTG	1				1
ATCGGC/ATGCCG		1			1
