Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-52/megassr/results/hub_GCF_020782995.1/fasta/hub_GCF_020782995.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              57
Total size of examined sequences (bp):           5284251
Total number of identified SSRs:                 58
Number of SSR containing sequences:              22
Number of sequences containing more than 1 SSR:  13
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	14
3	20
5	11
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	2		2
GC	-	-	-	11	1	12
CAG	-	-	4			4
CCG	-	-	1			1
CGC	-	-	1			1
CGG	-	-	4	1		5
CTG	-	-	1			1
GCC	-	-	2			2
GCG	-	-	4	2		6
CGCCG	4					4
GCGCA	1					1
GCGCC	1					1
GCGCG	2					2
GCGGC	1					1
GGCGC	1					1
TGTTT	1					1
ACCGGC	2					2
CCACCG	1					1
CCGGCA	1					1
CCGGCG	1					1
CGCCAG	1					1
CGCCTG	1					1
CGGCAC	1					1
CTGGCG	1					1
GCCAGC	2					2
GGCGCT	1					1
TCGCCG	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	13	1	14
AGC/CTG	-	-	5			5
CCG/CGG	-	-	12	3		15
AAAAC/GTTTT	1					1
AGCGC/CGCTG	1					1
CCGCG/CGCGG	9					9
ACCGCC/CGGTGG	1					1
ACCGGC/CCGGTG	4					4
ACGGCG/CCGTCG	1					1
AGCGCC/CGCTGG	5					5
AGGCGC/CCTGCG	1					1
CCGGCG/CCGGCG	1					1
