Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-55/megassr/results/hub_GCF_020782915.1/fasta/hub_GCF_020782915.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              25
Total size of examined sequences (bp):           3357796
Total number of identified SSRs:                 10
Number of SSR containing sequences:              5
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	2
5	3
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	2	2
GCC	-	-	1		1
TCA	-	-	1		1
AAAAT	1				1
TTTGC	1				1
TTTTA	1				1
AACTGC	1				1
CCATCG	1				1
TTTTAT	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	2	2
ATC/ATG	-	-	1		1
CCG/CGG	-	-	1		1
AAAAT/ATTTT	2				2
AAAGC/CTTTG	1				1
AAAAAT/ATTTTT	1				1
AACTGC/AGTTGC	1				1
ATCGCC/ATGGCG	1				1
