Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-51/megassr/results/hub_GCF_020731385.1/fasta/hub_GCF_020731385.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              188
Total size of examined sequences (bp):           5125491
Total number of identified SSRs:                 65
Number of SSR containing sequences:              19
Number of sequences containing more than 1 SSR:  13
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	14
3	24
4	1
5	12
6	14

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
CG	-	-	-	6		1	7
GC	-	-	-	5	1	1	7
CAG	-	-	3				3
CCG	-	-	3				3
CGC	-	-	5				5
CGG	-	-	4				4
GCA	-	-	2				2
GCC	-	-	2				2
GCG	-	-	2				2
GCT	-	-	1				1
GGC	-	-	1				1
TGC	-	-	1				1
TAGG	-	1					1
AAAAT	1						1
AAACA	1						1
CGCCG	1						1
CGCGC	1						1
CGGCG	1						1
GCCGC	2						2
GCGCC	3						3
GGCGC	1						1
TAATT			1				1
AAAACC	1						1
CAACAG	1						1
CCAGCG		1					1
CCCCAT		1					1
CGCCTG	1						1
CGGCAC	1						1
CGGCGA	1						1
CTGGCG	1						1
GCGCCA	1						1
GCGGTG	1						1
GCTGGC	1						1
GCTGTC	1						1
TCAGCG	1						1
TGCCGG	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
CG/CG	-	-	-	11	1	2	14
AGC/CTG	-	-	7				7
CCG/CGG	-	-	17				17
ACCT/AGGT	-	1					1
AAAAC/GTTTT	1						1
AAAAT/ATTTT	1						1
AAATT/AATTT			1				1
CCGCG/CGCGG	9						9
AAAACC/GGTTTT	1						1
AACAGC/CTGTTG	1						1
ACAGCG/CGCTGT	1						1
ACCGCC/CGGTGG	1						1
ACCGGC/CCGGTG	2						2
ACGCTG/AGCGTC	1						1
ACGGCG/CCGTCG	1						1
AGCGCC/CGCTGG	3	1					4
AGGCGC/CCTGCG	1						1
ATCCCC/ATGGGG		1					1
