Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-45/megassr/results/hub_GCF_020592835.1/fasta/hub_GCF_020592835.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              188
Total size of examined sequences (bp):           2992045
Total number of identified SSRs:                 8
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  0
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	1
5	3
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	1	1
ATG	-	-	1		1
CCAAA	1				1
GTTTG	1				1
TTTAT	1				1
AAAAAT	1				1
CAACAG	1				1
TTTTTC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	1	1
ATC/ATG	-	-	1		1
AAAAT/ATTTT	1				1
AAACC/GGTTT	2				2
AAAAAG/CTTTTT	1				1
AAAAAT/ATTTTT	1				1
AACAGC/CTGTTG	1				1
