Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-44/megassr/results/hub_GCF_020592795.1/fasta/hub_GCF_020592795.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              99
Total size of examined sequences (bp):           2676796
Total number of identified SSRs:                 8
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  0
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	1
5	1
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
TCA	-	-	1																1
ATAAA	1																		1
ACACCA	1																		1
CAAAAC																		1	1
CAACAG	1																		1
CTTCTC	1																		1
TTTCTT	1																		1
TTTTTC	1																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
ATC/ATG	-	-	1																1
AAAAT/ATTTT	1																		1
AAAAAG/CTTTTT	2																		2
AAAACC/GGTTTT																		1	1
AACACC/GGTGTT	1																		1
AACAGC/CTGTTG	1																		1
AAGGAG/CCTTCT	1																		1
