Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-43/megassr/results/hub_GCF_020592775.1/fasta/hub_GCF_020592775.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              163
Total size of examined sequences (bp):           2858552
Total number of identified SSRs:                 6
Number of SSR containing sequences:              6
Number of sequences containing more than 1 SSR:  0
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
3	1
5	1
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																												1	1
TCA	-	-	1																																																											1
TTTAT	1																																																													1
AGATTT	1																																																													1
GGTTTT		1																																																												1
TTTTTC	1																																																													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																												1	1
ATC/ATG	-	-	1																																																											1
AAAAT/ATTTT	1																																																													1
AAAAAG/CTTTTT	1																																																													1
AAAACC/GGTTTT		1																																																												1
AAATCT/AGATTT	1																																																													1
