Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-58/megassr/results/hub_GCF_020592465.1/fasta/hub_GCF_020592465.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              137
Total size of examined sequences (bp):           3078294
Total number of identified SSRs:                 17
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	1
5	7
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	1	1
TA	-	-	-	1	1
ATG	-	-	1		1
AGAAG	1				1
CACTT	1				1
CTTTT	1				1
GAAAA	2				2
TTTCG	1				1
TTTTA	1				1
AAAAGA	1				1
AAAGAA	1				1
AAGAAA	1				1
GAAAAA	1				1
GATGCG	1				1
GTTGGT	1				1
TTTCTG	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	2	2
ATC/ATG	-	-	1		1
AAAAG/CTTTT	3				3
AAAAT/ATTTT	1				1
AAACG/CGTTT	1				1
AAGAG/CTCTT	1				1
AAGTG/ACTTC	1				1
AAAAAG/CTTTTT	4				4
AAACAG/CTGTTT	1				1
AACACC/GGTGTT	1				1
ATCCGC/ATGCGG	1				1
