Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-50/megassr/results/hub_GCF_020164475.1/fasta/hub_GCF_020164475.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              286
Total size of examined sequences (bp):           6687978
Total number of identified SSRs:                 28
Number of SSR containing sequences:              26
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
4	3
5	6
6	15

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
CA	-	-	-			1													1
CAC	-	-	1																1
GGC	-	-			1														1
TGT	-	-	1																1
GCAG	-																	1	1
GCCG	-	1																	1
GCGA	-	1																	1
AACAC	1																		1
GCCAG	1																		1
GCGGC	2																		2
GTTGG	1																		1
TGCAG	1																		1
CACAGT			1																1
CATCGC	1																		1
CCAGCA	1																		1
CCGCTG	1																		1
CCTGGC	1																		1
CGCCAG	1																		1
CGCCTT	1																		1
CTGGTG	1																		1
GCCAGG	1																		1
GCGAAG	1																		1
GGCTCA	1																		1
GGTTCA				1															1
GTACAG		1																	1
GTTCAG	1																		1
TACAGG		1																	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
AC/GT	-	-	-			1													1
AAC/GTT	-	-	1																1
ACC/GGT	-	-	1																1
CCG/CGG	-	-			1														1
AGCG/CGCT	-	1																	1
AGGC/CCTG	-																	1	1
CCGG/CCGG	-	1																	1
AACAC/GTGTT	1																		1
AACCC/GGGTT	1																		1
ACTGC/AGTGC	1																		1
AGGCC/CCTGG	1																		1
CCGCG/CGCGG	2																		2
AACCTG/AGGTTC	1			1															2
AAGGCG/CCTTCG	2																		2
ACAGGT/ACCTGT		2																	2
ACAGTC/ACTGTG			1																1
ACCAGC/CTGGTG	2																		2
AGCCTG/AGGCTC	1																		1
AGCGCC/CGCTGG	1																		1
AGCGGC/CCGCTG	1																		1
AGGGCC/CCCTGG	2																		2
ATCGCC/ATGGCG	1																		1
