Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-53/megassr/results/hub_GCF_020148125.1/fasta/hub_GCF_020148125.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              117
Total size of examined sequences (bp):           5568716
Total number of identified SSRs:                 55
Number of SSR containing sequences:              25
Number of sequences containing more than 1 SSR:  12
Number of SSRs present in compound formation:    9


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	3
2	5
3	17
4	2
5	13
6	15

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1																	1	3
AT	-	-	-	1																																	1
CG	-	-	-	2	1																																3
GC	-	-	-	1																																	1
CAC	-	-	1																																		1
CAG	-	-	1																																		1
CCG	-	-	1																																		1
CGC	-	-		1																																	1
CGG	-	-	3																																		3
CGT	-	-		1																																	1
CTG	-	-	3																																		3
GAC	-	-	1																																		1
GCG	-	-		1																																	1
GGC	-	-	2																																		2
GGT	-	-	1																																		1
TCG	-	-	1																																		1
ACCA	-										1	1																									2
AATGG	1						1																														2
AATGT	1																																				1
ATGGA		1																																			1
ATTCC	1																																				1
CCGCG	1																																				1
GAATG	1																																				1
GCGCG	1																																				1
GGAAT	1			1																																	2
TGGAA								1																													1
TGGCC	1																																				1
TTTTA	1																																				1
AATGCC	1																																				1
ATGTTC			1																																		1
ATTTCT			1																																		1
CAGCTC	1																																				1
CGACTC	1	1																																			2
CGACTT	1																																				1
CTGGCA							1																														1
GACGAA	1																																				1
GAGTCA						1																															1
GCCAGA	1																																				1
GCTCCG		1																																			1
GTGGAA	1																																				1
TCGTCT		1																																			1
TCGTGG	1																																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1																	1	3
AT/AT	-	-	-	1																																	1
CG/CG	-	-	-	3	1																																4
ACC/GGT	-	-	2																																		2
ACG/CGT	-	-	2	1																																	3
AGC/CTG	-	-	4																																		4
CCG/CGG	-	-	6	2																																	8
AACC/GGTT	-										1	1																									2
AAAAT/ATTTT	1																																				1
AATGG/ATTCC	4	1		1			1	1																													8
AATGT/ACATT	1																																				1
AGGCC/CCTGG	1																																				1
CCGCG/CGCGG	2																																				2
AAATAG/ATTTCT			1																																		1
AACATG/ATGTTC			1																																		1
AAGACG/CGTCTT	1	1																																			2
AAGTCG/ACTTCG	1																																				1
AAGTGG/ACTTCC	1																																				1
AATGCC/ATTGGC	1																																				1
ACCACG/CGTGGT	1																																				1
ACTCCG/AGTCGG	1	1																																			2
ACTCTG/AGAGTC						1																															1
ACTGGC/AGTGCC							1																														1
AGAGCC/CTCTGG	1																																				1
AGCCGG/CCGGCT		1																																			1
AGCTCC/AGCTGG	1																																				1
