Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-52/megassr/results/hub_GCF_019720735.1/fasta/hub_GCF_019720735.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           924269
Total number of identified SSRs:                 20
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	14
3	2
5	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1	1
AT	-	-	-				1			1											2
CT	-	-	-			1			1												2
GA	-	-	-	1	1	1			1	3			1								8
TA	-	-	-					1													1
TC	-	-	-								1										1
GCT	-	-	2																		2
AGAAA	1																				1
CATTT	1																				1
TCTTG	1																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-			1	1
AG/CT	-	-	-	1	1	2			2	3	1		1								11
AT/AT	-	-	-				1	1		1											3
AGC/CTG	-	-	2																		2
AAAAG/CTTTT	1																				1
AAATG/ATTTC	1																				1
AAGAC/CTTGT	1																				1
