Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-149/megassr/results/hub_GCF_019361075.1/fasta/hub_GCF_019361075.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              109
Total size of examined sequences (bp):           4798158
Total number of identified SSRs:                 26
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	10
5	4
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG	-	-	-	2					2
GC	-	-	-	3					3
AGC	-	-	1						1
CCG	-	-	1	1					2
CGG	-	-	3						3
CTG	-	-	1						1
GCG	-	-	1						1
TGG	-	-	1						1
TTA	-	-	1						1
ATTTT	1								1
CGCGC	1								1
CGCGG	1								1
GGCGC	1								1
ATGGTC								1	1
CGACAG	1								1
CGACTT	1								1
CGCCAG	1								1
CGGCTT	1								1
GCTGGC	1								1
TGATGG	1								1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
CG/CG	-	-	-	5					5
AAT/ATT	-	-	1						1
ACC/GGT	-	-	1						1
AGC/CTG	-	-	2						2
CCG/CGG	-	-	5	1					6
AAAAT/ATTTT	1								1
CCGCG/CGCGG	3								3
AAGCCG/CGGCTT	1								1
AAGTCG/ACTTCG	1								1
ACAGCG/CGCTGT	1								1
ACCATC/ATGGTG	1								1
ACCATG/ATGGTC								1	1
AGCGCC/CGCTGG	2								2
