Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-140/megassr/results/hub_GCF_019360835.1/fasta/hub_GCF_019360835.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              93
Total size of examined sequences (bp):           4830590
Total number of identified SSRs:                 25
Number of SSR containing sequences:              18
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	7
4	2
5	3
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG	-	-	-	3							3
GC	-	-	-	2							2
CCG	-	-	1								1
CGG	-	-	1								1
GCA	-	-	1								1
GCC	-	-	1								1
GCG	-	-	2								2
GCT	-	-	1								1
GCCA	-	1									1
TAAA	-	1									1
CAGCG	1										1
CGCGC	1										1
GCGCC	1										1
ACCGAG		1									1
CCTGTT									1		1
CTGGCG	1										1
GAAGTC	1										1
GCCAGC	1										1
GCGGAG	1										1
TGGTCG										1	1
TTGCCC					1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG/CG	-	-	-	5							5
AGC/CTG	-	-	2								2
CCG/CGG	-	-	5								5
AAAT/ATTT	-	1									1
AGCC/CTGG	-	1									1
AGCGC/CGCTG	1										1
CCGCG/CGCGG	2										2
AACAGG/CCTGTT									1		1
AAGGGC/CCCTTG					1						1
AAGTCG/ACTTCG	1										1
ACCACG/CGTGGT										1	1
ACCGAG/CGGTCT		1									1
AGCGCC/CGCTGG	2										2
AGGCGG/CCGCCT	1										1
