Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-135/megassr/results/hub_GCF_019360735.1/fasta/hub_GCF_019360735.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              95
Total size of examined sequences (bp):           4980018
Total number of identified SSRs:                 23
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	6
4	2
5	3
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG	-	-	-	3							3
GC	-	-	-	2							2
AGC	-	-	1								1
CCG	-	-	2								2
CGG	-	-	1								1
GCA	-	-	1								1
GCG	-	-	1								1
TAAA	-	1									1
TGGC	-	1									1
CAGCG	1										1
CGCGC	1										1
GGCGC	1										1
CCTGTT										1	1
CGACTT	1										1
CTGGCG	1										1
GCAAGG							1				1
GCTGGC	1										1
TGGTCG			1								1
TGGTTG	1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
CG/CG	-	-	-	5							5
AGC/CTG	-	-	2								2
CCG/CGG	-	-	4								4
AAAT/ATTT	-	1									1
AGCC/CTGG	-	1									1
AGCGC/CGCTG	1										1
CCGCG/CGCGG	2										2
AACAGG/CCTGTT										1	1
AACCAC/GGTTGT	1										1
AAGGGC/CCCTTG							1				1
AAGTCG/ACTTCG	1										1
ACCACG/CGTGGT			1								1
AGCGCC/CGCTGG	2										2
