Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-134/megassr/results/hub_GCF_019360705.1/fasta/hub_GCF_019360705.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              82
Total size of examined sequences (bp):           4975548
Total number of identified SSRs:                 23
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	6
4	2
5	3
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG	-	-	-	4								4
GC	-	-	-	1								1
GCA	-	-	1									1
GCC	-	-	1									1
GCG	-	-	3									3
GCT	-	-	1									1
TAAA	-	1										1
TGGC	-	1										1
CAGCG	1											1
CGCGC	1											1
GGCGC	1											1
CAACCA	1											1
CCTGTT										1		1
CGACTT	1											1
CTGGCG	1											1
GCTGGC	1											1
TGGTCG											1	1
TTGCCC						1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG/CG	-	-	-	5								5
AGC/CTG	-	-	2									2
CCG/CGG	-	-	4									4
AAAT/ATTT	-	1										1
AGCC/CTGG	-	1										1
AGCGC/CGCTG	1											1
CCGCG/CGCGG	2											2
AACAGG/CCTGTT										1		1
AACCAC/GGTTGT	1											1
AAGGGC/CCCTTG						1						1
AAGTCG/ACTTCG	1											1
ACCACG/CGTGGT											1	1
AGCGCC/CGCTGG	2											2
