Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-126/megassr/results/hub_GCF_019360215.1/fasta/hub_GCF_019360215.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              72
Total size of examined sequences (bp):           4555774
Total number of identified SSRs:                 24
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	7
4	2
5	5
6	4

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
CG	-	-	-	3												3
GC	-	-	-	3												3
CGC	-	-	1													1
CGG	-	-	1													1
CTG	-	-	1													1
GCA	-	-								1						1
GCC	-	-	1													1
GCG	-	-	2													2
TAAA	-	1														1
TGGC	-	1														1
AAAAT	1															1
ATTTT	1															1
CGCGG	1															1
GCGCG	1															1
GGCGC	1															1
CGACTT	1															1
CGCCAG	1															1
GCTGGC	1															1
TGGTCG															1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
CG/CG	-	-	-	6												6
AGC/CTG	-	-	1							1						2
CCG/CGG	-	-	5													5
AAAT/ATTT	-	1														1
AGCC/CTGG	-	1														1
AAAAT/ATTTT	2															2
CCGCG/CGCGG	3															3
AAGTCG/ACTTCG	1															1
ACCACG/CGTGGT															1	1
AGCGCC/CGCTGG	2															2
