Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-123/megassr/results/hub_GCF_019360155.1/fasta/hub_GCF_019360155.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              95
Total size of examined sequences (bp):           4737721
Total number of identified SSRs:                 30
Number of SSR containing sequences:              7
Number of sequences containing more than 1 SSR:  6
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	10
5	3
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG	-	-	-	5										5
GC	-	-	-	2										2
AGC	-	-	1											1
CCG	-	-	1											1
CGC	-	-		1										1
CGG	-	-	2	1										3
CTG	-	-											1	1
GCC	-	-	1											1
GCG	-	-	2											2
CGCGC	2													2
GCGCC	1													1
CCAGAG		1												1
CCGCAG	1													1
CCGCGG		1												1
CGGCAA	1													1
CTGGCG	1													1
CTGTTG	1													1
GAAGTC	1													1
GCTGGC	1													1
TCTTCA				1										1
TGGTCG										1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG/CG	-	-	-	7										7
AGC/CTG	-	-	1										1	2
CCG/CGG	-	-	6	2										8
CCGCG/CGCGG	3													3
AACAGC/CTGTTG	1													1
AACGGC/CCGTTG	1													1
AAGATG/ATCTTC				1										1
AAGTCG/ACTTCG	1													1
ACCACG/CGTGGT										1				1
AGAGCC/CTCTGG		1												1
AGCCGC/CGGCTG	1													1
AGCGCC/CGCTGG	2													2
CCGCGG/CCGCGG		1												1
