Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-119/megassr/results/hub_GCF_019360035.1/fasta/hub_GCF_019360035.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              92
Total size of examined sequences (bp):           4979164
Total number of identified SSRs:                 23
Number of SSR containing sequences:              17
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	6
4	2
5	3
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
CG	-	-	-	2												2
GC	-	-	-	3												3
CCG	-	-	2													2
CGC	-	-	1													1
CGG	-	-	1													1
GCA	-	-	1													1
GCT	-	-	1													1
GCCA	-	1														1
TATT	-	1														1
CAGCG	1															1
GCGCC	1															1
GCGCG	1															1
CAACCA	1															1
CACGAC															1	1
CGCCAG	1															1
GAACAG										1						1
GAAGTC	1															1
GCCAGC	1															1
TTGCCC												1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	total
CG/CG	-	-	-	5												5
AGC/CTG	-	-	2													2
CCG/CGG	-	-	4													4
AAAT/ATTT	-	1														1
AGCC/CTGG	-	1														1
AGCGC/CGCTG	1															1
CCGCG/CGCGG	2															2
AACAGG/CCTGTT										1						1
AACCAC/GGTTGT	1															1
AAGGGC/CCCTTG												1				1
AAGTCG/ACTTCG	1															1
ACCACG/CGTGGT															1	1
AGCGCC/CGCTGG	2															2
