Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-51/megassr/results/hub_GCF_019145475.1/fasta/hub_GCF_019145475.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              55
Total size of examined sequences (bp):           6448667
Total number of identified SSRs:                 38
Number of SSR containing sequences:              21
Number of sequences containing more than 1 SSR:  11
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	1
4	1
5	6
6	28

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG	-	-	-	1								1
GC	-	-	-	1								1
AAC	-	-	1									1
AGCC	-										1	1
AGCCA			1									1
CCGCC	1											1
CCGCG	1											1
GCCAG	1											1
GCCCG	1											1
TCAGT					1							1
AAAGCC				1								1
AAGCAC	1											1
AGCAAA			1									1
AGCAAG					1							1
AGCAGG		1										1
AGCCAG	1											1
CAAAAG	2			1								3
CAACAT					1							1
CAAGAC	1											1
CAGGGT	1											1
CCCAAT					1							1
CCGCCA	1											1
CCTGCA				1								1
CGATGG	1											1
CTGACG		1										1
GCAAAG			1									1
GCACCG	1											1
GCACCT	1											1
GCGCTG	1											1
GCTTTT		1	1									2
GGATCA	1											1
GGCTTT		1										1
GTGCCG	1											1
TGCACC				1								1
TTCGGG		1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG/CG	-	-	-	2								2
AAC/GTT	-	-	1									1
AGCC/CTGG	-										1	1
AACTG/AGTTC					1							1
AAGCC/CTTGG			1									1
AGGCC/CCTGG	1											1
CCCCG/CGGGG	1											1
CCCGG/CCGGG	1											1
CCGCG/CGCGG	1											1
AAAAGC/CTTTTG	2	1	2	1								6
AAAGCC/CTTTGG		1		1								2
AAAGGC/CCTTTG			1									1
AACATC/ATGTTG					1							1
AACCCG/CGGGTT		1										1
AAGACC/CTTGGT	1											1
AAGAGC/CTCTTG					1							1
AAGCAC/CTTGTG	1											1
AATCCC/ATTGGG					1							1
ACCCTG/AGGGTC	1											1
ACCGCC/CGGTGG	1											1
ACCGGC/CCGGTG	2											2
ACCTGC/AGGTGC	1			2								3
ACGCTG/AGCGTC		1										1
AGAGCC/CTCTGG	1											1
AGCAGG/CCTGCT		1										1
AGCGCC/CGCTGG	1											1
AGGATC/ATCCTG	1											1
ATCGCC/ATGGCG	1											1
