Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-50/megassr/results/hub_GCF_019145435.1/fasta/hub_GCF_019145435.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              7
Total size of examined sequences (bp):           6133900
Total number of identified SSRs:                 43
Number of SSR containing sequences:              3
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	2
4	1
5	8
6	30

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
CA	-	-	-	1																	1
CG	-	-	-	1																	1
CGG	-	-	1																		1
GCC	-	-	1																		1
CAGT	-				1																1
CGCCG	3																				3
GCCCG	1																				1
GCGGC	2																				2
GGTGC	1																				1
TCCGA	1																				1
AGCAAG			1																		1
AGCCCG	1																				1
AGCTCA	1																				1
ATGAAC	1																				1
CACCGC	1																				1
CAGCAC	1																				1
CAGGCC	1																				1
CAGGTC	1																				1
CAGTTC	1																				1
CCAGGT	1																				1
CCGGTT	1																				1
CCGTTC	1																				1
CCTGCA																				1	1
CGATGG	1																				1
CGCCAT	1		1																		2
CGGTGC	1																				1
CGTTGG	1																				1
CTTCGC	1																				1
GCATCA	1																				1
GCCCAG		1																			1
GCCGGA			1																		1
GCGCCT	1																				1
GCGCTG	1																				1
GGCCAG	1																				1
GGCCTG	1																				1
GTCGGC	1																				1
GTTCGG	1																				1
TCAGGT	1																				1
TGGCGG	1																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
AC/GT	-	-	-	1																	1
CG/CG	-	-	-	1																	1
CCG/CGG	-	-	2																		2
ACTG/AGTC	-				1																1
ACCGC/CGGTG	1																				1
ATCCG/ATCGG	1																				1
CCCGG/CCGGG	1																				1
CCGCG/CGCGG	5																				5
AACATG/ATGTTC	1																				1
AACCCG/CGGGTT	1																				1
AACCGG/CCGGTT	1																				1
AACCTG/AGGTTC	1																				1
AACGCC/CGTTGG	1																				1
AACGGG/CCCGTT	1																				1
AACTGG/AGTTCC	1																				1
AAGAGC/CTCTTG			1																		1
AAGCTC/AGCTTG	1																				1
AAGGCG/CCTTCG	1																				1
ACCAGC/CTGGTG	1																				1
ACCGCC/CGGTGG	2																				2
ACCGGC/CCGGTG	1																				1
ACCTGC/AGGTGC																				1	1
ACCTGG/AGGTCC	2																				2
ACGCCG/CGGCGT	1																				1
AGCATC/ATGCTG	1																				1
AGCCCG/CGGGCT	1																				1
AGCCGG/CCGGCT			1																		1
AGCGCC/CGCTGG	1																				1
AGGCCC/CCTGGG	2	1																			3
AGGCGC/CCTGCG	1																				1
AGGGCC/CCCTGG	1																				1
ATCGCC/ATGGCG	2		1																		3
