Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-49/megassr/results/hub_GCF_019139895.1/fasta/hub_GCF_019139895.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           6147080
Total number of identified SSRs:                 84
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    7


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	9
4	8
5	7
6	57

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
GC	-	-	-	3										3
CAC	-	-	2											2
CGG	-	-	2											2
CTG	-	-	2											2
GCA	-	-	1											1
GCC	-	-	1											1
GGC	-	-	1											1
AAAC	-							1						1
AACC	-	1												1
GTTG	-							2				1		3
GTTT	-	1						1						2
TTTG	-						1							1
ATTTT	1													1
CAAAT			1											1
CGGCG	1													1
GCGCG	1													1
GTTCG	1													1
GTTGA			1											1
TTGAA			1											1
AACCCG							1							1
AAGCCA					1									1
AGCCCG		1												1
AGGCCC	1													1
ATGGCC	1													1
CAAGAT				1										1
CAGGAA	2													2
CAGGCC	1													1
CCAGGC	1													1
CCCGAA		1	3		1									5
CCCGAG	1												1	2
CCGAAC		1									1			2
CCGACA	1													1
CCGCAC			1											1
CCGGAA							1							1
CGAACC				1	2				1					4
CGGGTT	1													1
CGGTGC	1													1
CTCGCC	1													1
CTCGGG	1													1
CTGCGC	2													2
CTGGGC	1													1
GCCACA	1													1
GCCAGG	1													1
GCCCAG	1													1
GCCCTG	1													1
GCTGGT	2													2
GGCCAT	1													1
GGGAGC	1													1
GGGCCT	1													1
GGGTTC		2			1	1			1					5
GGTCAA	1													1
GGTTCG	1	1												2
TCATGG			1											1
TCGGGG		1							1					2
TGCCTG		1												1
TGCTGG	1													1
TGGCTG	1													1
TTGCCC	1													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG/CG	-	-	-	3										3
ACC/GGT	-	-	2											2
AGC/CTG	-	-	3											3
CCG/CGG	-	-	4											4
AAAC/GTTT	-	1					1	2						4
AACC/GGTT	-	1						2				1		4
AAAAT/ATTTT	1													1
AAATC/ATTTG			1											1
AACCG/CGGTT	1													1
AACTC/AGTTG			1											1
AATTC/AATTG			1											1
CCGCG/CGCGG	2													2
AAAGCC/CTTTGG					1									1
AACAGG/CCTGTT	2													2
AACCCG/CGGGTT	2	5	3	1	4	1	1		2		1			20
AACCGG/CCGGTT							1							1
AAGATC/ATCTTG				1										1
AAGGGC/CCCTTG	1													1
AAGGTC/ACCTTG	1													1
ACACCG/CGGTGT	1													1
ACAGCC/CTGTGG	2													2
ACAGGC/CCTGTG		1												1
ACCAGC/CTGGTG	3													3
ACCATG/ATGGTC			1											1
ACCCCG/CGGGGT		1							1					2
ACCCGC/CGGGTG			1											1
ACCGGC/CCGGTG	1													1
AGCCCG/CGGGCT	2	1											1	4
AGCGGG/CCCGCT	1													1
AGGCCC/CCTGGG	6													6
AGGCGC/CCTGCG	2													2
AGGGCC/CCCTGG	2													2
AGGGCG/CCCTCG	1													1
ATGGCC/ATGGCC	2													2
