Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-49/megassr/results/hub_GCF_019139835.1/fasta/hub_GCF_019139835.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           5987104
Total number of identified SSRs:                 64
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	7
4	3
5	7
6	44

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
CG	-	-	-		1															1
GC	-	-	-	2																2
CAC	-	-	1																	1
CGG	-	-	2																	2
CTG	-	-	1																	1
GCA	-	-	2																	2
GCC	-	-	1																	1
GTTG	-		1				1	1												3
CCGCG	1																			1
CCGGC	1																			1
CGGCC	1																			1
CGGCG	1																			1
GCCGC	1																			1
GGCAG	1																			1
GTTTG	1																			1
ACCAGC	1																			1
AGCAAG										1										1
CAACAC		1																		1
CAGGAA	2																			2
CAGGCC	1																			1
CCACCG	1																			1
CCAGGC	1																			1
CCCAAA						1														1
CCCGAA	2			2	2		1													7
CCGAAC					2															2
CCTGGC	1																			1
CGAACC		1																		1
CGGCGT	1																			1
CGGGTT																			1	1
CGGTGC	1																			1
GCAGTA		1																		1
GCCCTG	1																			1
GCCGAT	1																			1
GCTGGT	1																			1
GGCCAT	2																			2
GGCGAA	1																			1
GGCTCA		1																		1
GGGCAA	1																			1
GGGCAT	1																			1
GGGCCG		1																		1
GGGTTC					1		1	2		1										5
GGGTTG	1																			1
GGTCAA	1																			1
GGTGCA										1										1
GGTTCG								1												1
TCCAGC	1																			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	total
CG/CG	-	-	-	2	1															3
ACC/GGT	-	-	1																	1
AGC/CTG	-	-	3																	3
CCG/CGG	-	-	3																	3
AACC/GGTT	-		1				1	1												3
AAACC/GGTTT	1																			1
AGGGC/CCCTG	1																			1
CCCGG/CCGGG	2																			2
CCGCG/CGCGG	3																			3
AAACCC/GGGTTT						1														1
AACACC/GGTGTT		1																		1
AACAGG/CCTGTT	2																			2
AACCCC/GGGGTT	1																			1
AACCCG/CGGGTT	2	1		2	5		2	3		1									1	17
AAGAGC/CTCTTG										1										1
AAGGCG/CCTTCG	1																			1
AAGGGC/CCCTTG	1																			1
AAGGTC/ACCTTG	1																			1
ACCAGC/CTGGTG	2																			2
ACCGCC/CGGTGG	1																			1
ACCGGC/CCGGTG	1																			1
ACCTGC/AGGTGC										1										1
ACGCCG/CGGCGT	1																			1
ACTGCT/AGCAGT		1																		1
AGCCTG/AGGCTC		1																		1
AGCTCC/AGCTGG	1																			1
AGGCCC/CCTGGG	2																			2
AGGGCC/CCCTGG	2																			2
ATCGGC/ATGCCG	1																			1
ATGCCC/ATGGGC	1																			1
ATGGCC/ATGGCC	2																			2
CCCCGG/CCGGGG		1																		1
