Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-48/megassr/results/hub_GCF_019139675.1/fasta/hub_GCF_019139675.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           5758328
Total number of identified SSRs:                 48
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	13
5	4
6	29

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG	-	-	-	1										1
GC	-	-	-	1										1
CAA	-	-	1										1	2
CAC	-	-	3											3
CAG	-	-	2											2
CCG	-	-	1											1
CGC	-	-	2											2
CGG	-	-	2											2
GCG	-	-	1											1
CAAAC	1													1
CGATT	1													1
CGCGG	1													1
GCGGC	1													1
AACGGC		1												1
AAGTCA									1					1
AGCAAG					1									1
ATCGGC						1								1
CAGCTC	1													1
CAGGAA	1													1
CAGGCC	1													1
CAGGCG	1													1
CATCGG	1													1
CCCAGG	1													1
CCCGAG		1												1
CCGAAC				1										1
CCTTGA	1													1
CGCTAT	1													1
CGGCAA										1				1
CGGGAT		1												1
CGTGAT		1												1
CTGTTC	1													1
GACGCC	1													1
GATCTT			1											1
GCACCA	1													1
GCTCTT	1													1
GGCGCA	1													1
GGTGAC	1													1
TGATCT							1							1
TTGCCG		1												1
TTGCTC											1			1
TTTGAC									1					1
TTTGGC		1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG/CG	-	-	-	2										2
AAC/GTT	-	-	1										1	2
ACC/GGT	-	-	3											3
AGC/CTG	-	-	2											2
CCG/CGG	-	-	6											6
AAACC/GGTTT	1													1
AATCG/ATTCG	1													1
CCGCG/CGCGG	2													2
AAAGCC/CTTTGG		1												1
AAAGTC/ACTTTG									2					2
AACAGG/CCTGTT	2													2
AACCCG/CGGGTT				1										1
AACGGC/CCGTTG		2								1				3
AAGAGC/CTCTTG	1				1						1			3
AAGATC/ATCTTG			1				1							2
AAGGTC/ACCTTG	1													1
ACCAGC/CTGGTG	1													1
ACCGTC/ACGGTG	1													1
ACGATC/ATCGTG		1												1
ACGCCG/CGGCGT	1													1
AGCCCG/CGGGCT		1												1
AGCGAT/ATCGCT	1													1
AGCTCC/AGCTGG	1													1
AGGCCC/CCTGGG	2													2
AGGCGC/CCTGCG	2													2
ATCCCG/ATCGGG		1												1
ATCGGC/ATGCCG	1					1								2
