Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-47/megassr/results/hub_GCF_019139535.1/fasta/hub_GCF_019139535.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           5527654
Total number of identified SSRs:                 111
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    4


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	11
4	1
5	19
6	73

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
CG	-	-	-	2																	2
GC	-	-	-	4																	4
TA	-	-	-	1																	1
CAA	-	-																		1	1
CAG	-	-	1				1														2
CCG	-	-	3																		3
CGG	-	-	2																		2
CTG	-	-	1																		1
GCC	-	-		1																	1
GGT	-	-	1																		1
AGCA	-																1				1
AGGCG	1																				1
AGGGC	1																				1
CAAGC	1																				1
CCAAT		1																			1
CCGCG	1																				1
CCGGC	1																				1
CGCCG	2																				2
CTCCG	1																				1
GCCAG	1																				1
GCCGC	2																				2
GCGCC	1																				1
GCGGC	1																				1
GGCAG	1																				1
GGCGA	1																				1
GGCGG	1																				1
GGGGC	1																				1
TGGGC	1																				1
AAAGTC			1				1	1	1	1											5
AAGTCA									1												1
ACAGCA				1																	1
AGAGCA													1								1
AGCAAC									1												1
AGCACC	1																				1
CAAAGC			1																		1
CAAAGT	1																				1
CAACGG							1														1
CAGATC				1																	1
CAGGAA	2																				2
CAGGCC	1																				1
CATCGC	1																				1
CCAAGC	1																				1
CCAGCC	1																				1
CCAGGC	2																				2
CCCAAC	1																				1
CCGAAC									1												1
CCGACC					1																1
CCTGGC	1																				1
CGACCC		1																			1
CGCTGG	1																				1
CGGGTT								1													1
CGGTGC	1																				1
CTCTTG		1																			1
CTGTTG	1												1								2
CTTGCT				1																	1
GACTTT			2	2																	4
GAGCAG					1																1
GATCTT				1																	1
GCAACA												1									1
GCCAAA						1															1
GCCGAT	1																				1
GCCGTT						1															1
GCCTGG	1																				1
GCCTTT	1																				1
GCGCTG	1																				1
GCGGTG	1																				1
GCTGTT		1																			1
GGATCT														1							1
GGCAAG	1																				1
GGCCAT	1																				1
GGCCCT	1																				1
GGCCTG	2																				2
GGGCAA	1																				1
GGGGGC	1																				1
GGTCAA	1																				1
GTCGAC	1																				1
GTCGGC		1																			1
GTTGCC				1																	1
TCTTGC			1																		1
TGAACC				1																	1
TGACTT	1																				1
TGAGCC	1																				1
TGCAGG	1																				1
TGCTCT				1																	1
TGCTGG	1																				1
TGGCGA	1																				1
TTGACT			2																		2
TTGCCC				1																	1
TTGCTC	1																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	total
AT/AT	-	-	-	1																	1
CG/CG	-	-	-	6																	6
AAC/GTT	-	-																		1	1
ACC/GGT	-	-	1																		1
AGC/CTG	-	-	2				1														3
CCG/CGG	-	-	5	1																	6
AAGC/CTTG	-																1				1
AAGCC/CTTGG	1																				1
AATCC/ATTGG		1																			1
AGCCC/CTGGG	1																				1
AGCGG/CCGCT	1																				1
AGGCC/CCTGG	1																				1
AGGCG/CCTCG	2																				2
AGGGC/CCCTG	2																				2
CCCCG/CGGGG	2																				2
CCCGG/CCGGG	1																				1
CCGCG/CGCGG	7																				7
AAAGCC/CTTTGG			1			1															2
AAAGGC/CCTTTG	1																				1
AAAGTC/ACTTTG	2		5	2			1	1	2	1											14
AACAGC/CTGTTG	1	1		1					1			1	1								6
AACAGG/CCTGTT	2																				2
AACCCC/GGGGTT	1																				1
AACCCG/CGGGTT								1	1												2
AACCTG/AGGTTC				1																	1
AACGGC/CCGTTG				1		1	1														3
AAGAGC/CTCTTG	1	1	1	2									1								6
AAGATC/ATCTTG				1																	1
AAGCCC/CTTGGG	1																				1
AAGGGC/CCCTTG	2			1																	3
AAGGTC/ACCTTG	1																				1
ACCAGC/CTGGTG	2																				2
ACCCCG/CGGGGT		1			1																2
ACCGCC/CGGTGG	1																				1
ACCGGC/CCGGTG	1																				1
ACCTGC/AGGTGC	1																				1
ACGCCG/CGGCGT		1																			1
ACGTCG/ACGTCG	1																				1
AGATCC/ATCTGG				1										1							2
AGCAGG/CCTGCT					1																1
AGCCCC/CTGGGG	1																				1
AGCCTG/AGGCTC	1																				1
AGCGCC/CGCTGG	2																				2
AGGCCC/CCTGGG	6																				6
AGGGCC/CCCTGG	2																				2
ATCGCC/ATGGCG	2																				2
ATCGGC/ATGCCG	1																				1
ATGGCC/ATGGCC	1																				1
CCCCCG/CGGGGG	1																				1
