Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-56/megassr/results/hub_GCF_018406545.1/fasta/hub_GCF_018406545.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1158134
Total number of identified SSRs:                 22
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	6
3	2
5	7
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1
AT	-	-	-					1		1									2
TA	-	-	-					3		1									4
CAA	-	-	1																1
TTA	-	-			1														1
AAAAT	1																		1
CTTTT	1																		1
TATAT	1																		1
TATTA	1																		1
TATTT	1																		1
TTAAA	1																		1
TTTTA	1																		1
AAAAGA	1																		1
AAAGAT	1																		1
CTTAAA		1																	1
TAATTA	1																		1
TAATTC	1																		1
TAGAAA	1																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1	1
AT/AT	-	-	-					4		2									6
AAC/GTT	-	-	1																1
AAT/ATT	-	-			1														1
AAAAG/CTTTT	1																		1
AAAAT/ATTTT	3																		3
AAATT/AATTT	1																		1
AATAT/ATATT	2																		2
AAAAAG/CTTTTT	1																		1
AAACTT/AAGTTT		1																	1
AAAGAT/ATCTTT	1																		1
AAATAG/ATTTCT	1																		1
AATTAG/AATTCT	1																		1
AATTAT/AATTAT	1																		1
