Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-44/megassr/results/hub_GCF_018107685.1/fasta/hub_GCF_018107685.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           1003026
Total number of identified SSRs:                 9
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	1
4	4
5	1
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
AT	-	-	-	1	1
AAT	-	-	1		1
TAAA	-	1			1
TTAT	-	2			2
TTTA	-	1			1
CAATA	1				1
AAGGTA	1				1
TCATTT	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	1	1
AAT/ATT	-	-	1		1
AAAT/ATTT	-	4			4
AATAC/ATTGT	1				1
AAAATG/ATTTTC	1				1
AAAGGT/ACCTTT	1				1
