Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-57/megassr/results/hub_GCF_017927795.1/fasta/hub_GCF_017927795.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           6868917
Total number of identified SSRs:                 45
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	2
5	11
6	30

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
GC	-	-	-	2															2
GAG	-	-																1	1
GTG	-	-											1						1
AATTG	1																		1
CCCGG	1																		1
CCGCG	1																		1
CGCCG	1																		1
CTGCG	1																		1
GCCGC	1																		1
GCGCC	1																		1
GGCCC	1																		1
GGGAC	1																		1
GGTCG	1																		1
GTGCC	1																		1
AGCAGG	1																		1
CAGGGC	2																		2
CCAGCG	1																		1
CCAGGC	1																		1
CCCTGG	2																		2
CCTGGC	1																		1
CGCAGC				1															1
CGGCGC	1																		1
CGGTGC	1																		1
CTGGCC	1																		1
CTGGGC	1																		1
CTGGTG	1																		1
CTTGGC	1																		1
GATCAC							1												1
GCAACA	1																		1
GCCCTG	1																		1
GCCTGG	1																		1
GGAGCC	1																		1
GGAGCT		1																	1
GGCCAT	1																		1
GGCCCT	1																		1
GTGGAA	1																		1
TCAGGC	1																		1
TGCTCC								1											1
TGGGCC	1																		1
TGTTCC	1																		1
TTGCCC	1																		1
TTTGCT			1																1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
CG/CG	-	-	-	2															2
ACC/GGT	-	-											1						1
AGG/CCT	-	-																1	1
AATTC/AATTG	1																		1
ACCCG/CGGGT	1																		1
ACGGC/CCGTG	1																		1
ACGGG/CCCGT	1																		1
AGCGC/CGCTG	1																		1
CCCGG/CCGGG	2																		2
CCGCG/CGCGG	4																		4
AAAAGC/CTTTTG			1																1
AACAGC/CTGTTG	1																		1
AACAGG/CCTGTT	1																		1
AAGGCC/CCTTGG	1																		1
AAGGGC/CCCTTG	1																		1
AAGTGG/ACTTCC	1																		1
ACCAGC/CTGGTG	1																		1
ACCGGC/CCGGTG	1																		1
ACGATC/ATCGTG							1												1
AGCAGG/CCTGCT	1							1											2
AGCCGC/CGGCTG				1															1
AGCCGG/CCGGCT	1																		1
AGCCTG/AGGCTC	1																		1
AGCGCC/CGCTGG	1																		1
AGCTCC/AGCTGG		1																	1
AGGCCC/CCTGGG	4																		4
AGGGCC/CCCTGG	8																		8
ATGGCC/ATGGCC	1																		1
CCGGCG/CCGGCG	1																		1
