Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-45/megassr/results/hub_GCF_017815755.1/fasta/hub_GCF_017815755.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              73
Total size of examined sequences (bp):           2805865
Total number of identified SSRs:                 8
Number of SSR containing sequences:              6
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
5	3
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	total
AAAAT	1			1
ATACG	1			1
TAAAA	1			1
GATGCG		1		1
GCATCC	2		1	3
TCTTTA	1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	total
AAAAT/ATTTT	2			2
ACGAT/ATCGT	1			1
AAAGAT/ATCTTT	1			1
ATCCGC/ATGCGG	2	1	1	4
